Diffusion
Basis Function and a tractography
method for FiberCup-2009.
D.Sc.
Alonso Ramirez
Manzanares [alram@cimat.mx]
Introduction:
This page contains all the data and programas that run our
tractography method for the FiberCup
2009 Challenge.
In order to make the things simple we put all the data and programs
in a single ZIP file (see below). This ZIP file contains everything:
two toolboxes (Multi-tensor Fitting and tractography), the Fiber
Cup Diffusion Weighted MR data, and even, the nifti library for Matlab
(niftimatlib-1.0) that we use all the time for read and write MR data.
You can find additional/theoretical information about this package
at:
Downloads:
Data and Programas ZIP FILE
a) Lets assume that you decompress the ZIP file in folder named
/instalation_folder/
b) Add the following toolbox paths to the Matlab's path
/instalation_folder/DBF_matlab/niftimatlib-1.0/matlab/
/instalation_folder/DBF_matlab/
/instalation_folder/DBF_matlab/dbf_toolbox/
/instalation_folder/DBF_matlab/tracto_toolbox/
c) Edit in Matlab the script file
/instalation_folder/DBF_matlab/main_launcher.m
d) Run the script
/instalation_folder/DBF_matlab/main_launcher.m
in
Matlab. You should see the results in the figure below:
Trouble Shooting Section